The clutch would have (some) more life in it if the springs had not been touching the bolts.
The flywheel might be smooth now but maybe it wasn't so smooth when first fitted.
You can do a few things, amongst which may be:
You could simply fit another clutch which will last at least 38,000 miles. Maybe more if the flywheel smoother now than it was when new scenario is true. Lets say 40,000 miles as a guess.
You could skim a few thou off the heads of the bolts. if you take .040" off, they should still be perfectly serviceable and would extend the life of the next clutch. I don't know, lets say 60,000 miles.
The above scenarios would not involve removal of the flywheel or more importantly (if the engine is still in the car) the pan.
If you can find a good condition, useable as is 59a type flywheel and fit that, without it having to be skimmed, you will get the maximum life from your clutch. I don't know what can be expected, would 60,000 miles be normal? It's a heavy car and gets driven over demanding roads. It would last indefinitely if driven on freeways all the time.
If you find a flywheel and it can be made serviceable with just the lightest skim, the life should be as above, as long as the skim is not excessive, as it does seem reasonable that is what has caused the premature spring/bolt contact above.
I wouldn't worry about the bolts wiring too much. If they are torqued correctly, the wiring should never be called upon to stop them loosening. I found better success using thinner wire on the last job I did, but it still came up far short of some of the illustrations I have seen.
Hope the above helps in some way.
Long story short, find a better flywheel.
I just had a thought, did you say you had that one balanced? If that is the case one of the first two options may appeal more.
Mart.