1. "yes this bearing was a donor and was not made for this motor BUT it seems to have worn in ok." Did you use prussian blue or other disclosing dye (even magic marker) to see if this cap really fit the crank journal?
2. If the motor is in the truck then use the foil method, plastigage can mislead you. You are looking for .0015-.002 clearance. Never take more shims from the center main than anywhere else, even if you end up with more than .002 at the center
3. If the windows on the castle nut do not line up with the bolt hole when at specified torque the proper procedure is to remove the nut entirely and lightly grind off (face off) some of the nut on the SIDE of a grinding wheel while constantly rotating the nut to maintain even grinding. This must be done with a light touch and is trial and error and may have to be done more than once. Mains set at 50# will NOT clamp as well as mains set at 70 and you will have misleading readings. Ask me how I know. This is partially because you are trying to hold up the weight of the crank and a 64# flywheel if you are doing this in the truck. This is also why plastigage may not be accurate done this way.
4. I have yet to be able to get a torque wrench on the rear main bolts if the engine is in the car. As it is, I had to make a special socket by welding a 3/4 inch nut onto a spare correct-sized socket after I had shortened it by 1/4 inch with a cutoff wheel. Then I use a box wrench with a short length of pipe to get the leverage needed for 70-80 # of torque. Now I am ready for a 'ha-ha there is a special tool for this' from the crowd but I haven't found it yet. How do I know I have 70-80 # on those rear nuts? Easy, set an equiv. nut and bolt up in your vise, get the torque wrench out and crank it to 70 # and see what it feels like. It takes a fair bit of force and your arms will remember if you are good.
5. Unfortunately for some owners whose cars I have worked on, some previous mechanics either loosened to the closest window giving precious little clamping force (such as 30-40 #) or tightened the living daylights out of them to catch the next window to where it took a 6' cheater pipe to get the nuts off. Of course these fasteners were stretched beyond usage
6. The crank should turn with little effort right at the start (assuming the plugs are out); it should not be tight and then loosen up. Be sure to keep oil in the bearings while testing.
7. Make a logbook of what you have done to the shims and all in case you have to go back in; at least you will know exactly what has transpired. Be sure your shims are removed evenly from each side of the caps. At most, be one shim off; ie 3 on one side and 4 on the other. If I have to remove an odd number of shims from more than one bearing, I like the extra one to be on the same side on both caps. Prolly more OCD than needed. If removing shims to adjust, be sure to remove only one at a time, do not remove in pairs. Be sure the caps go back on with the same orientation they came out, do not flip them around. Do One cap at a time only. Start at the rear and work forward.
This is tedious but so important. With some patience you will be doing your engine a tremendous favor. this is what was routinely done in the old days until there were no more shims left. Clearly doing this with the engine out is easier, but we have this down pretty slick here in the car over a pit. I have also seen nuts with no cotters at all, makes me cringe.
Maybe think of trying it again with good torquing, I use a minimum of 70, that way I can go to 80 if the window doesn't quite line up; but you will still end up grinding some nuts.
Be sure to dump a qt of oil down the dizzy hole to get some oil to the main oilers in the valve chamber. The rest goes down the oil filler thus filling the dipper tray. Good luck