The initial problem reported is that the O/P said his distributor was advancing the wrong way. If he is reporting this correctly, the only thing that would cause this is the inadvertent conversion of a reverse rotation SBC mallory distributor from a reverse-rotation marine application. (There are such things.) On a distributor the turns CW, the advance works by moving CCW; on a CCW distributor it works by moving CW. This is controlled by the design of the breaker point plate and weights. I have always been a believer in "when you hear hoofbeats, think horses, not zebras". I think we should really determine the actual problem before offering solutions.
I am not a fan of Pertronix and do no use them, but I doubt they could cause this kind of problem.