I watched a very trustworthy car glass guy seal my '55 sedan windshield.
first, he took a thin plastic trowel and wrapped a cloth around it and sprayed windex on the cloth and on the glass near the seal. He used another tool to pull back the rubber se3al (it was still nice and soft although it was 20 yrs old). He stuck the plastic trowel with the cloth in the groove between rubber & glass and used it to clean out the groove. He got a ton of dirt out of it and started over a few times until the cloth came out clean. After drying the glass, he used a top quality tube of sealant and went all around the windshield. The cone shaped applicator on the tube had a very small hole cut in the end so it wouldn't spit out too much when he pumped the caulk gun. After the caulk was dry, he went around with a one-sided razor knife and cut off any excess.
If you installed your windshield without any sealant between the rubber and the windshield flange, you may never get leaks to stop. The '55/56 Ford car body has two snippets out of the bottom of the flange, one on driver side and one on passenger side. The contour of the metal slopes down toward the inside here so rainwater can collect here and leak down on your floor un-abated without a sealer.