Larry,
Hope you placed a strip of "dum-dum" (as Ford called it) between each of the four major top wood peices, front and back header peices and two side peices,and the metal part of the roof. This will insure that NO moisture will get through after tacking of the top material.
After tacking of top material, I placed a liberial amount of sealant on each tack head. Then after placing the four peices used to install the trim parts, another liberal amount on each tack head followed by the gutters and front and back trim parts.
Most restoreres do not do this however it was that way on my 29 Standard Coupe when I removed all the old wood so I went back with it that way.
Pluck