When rebuilding a rear axle assembly I check that the axle housing flanges are flat by setting them on a steel plate and eye balling the gap between the flange and the plate. Quite often you can hammer the flange back into shape. I run a file over all the mating machine surfaces lightly to remove any burrs.
When setting the carrier pre-load I make sure I have at least a .010 gasket on both sides. If I don't I shim the carrier bearings until I do.
I use Indian Head gasket sealer applied liberally to the gaskets so that it will run into the threads. I always use original banjo bolts as they do not have threads directly under the head of the bolt. Folk lore has it that there is something magic about the banjo threads and you should never run a dye or a tap. It may be true, I would never argue against it. However, I have used both a dye and a tap on occasion in order to salvage a banjo or original bolts. You never want to put lock washers on the bolts as it will surely leak oil.
One thing you can do without taking everything apart is to remove each of the 20 banjo bolts one at a time and coat the threads with Indian Head gasket sealer. 35 ft. lbs is the recommended torque specified in a number of how-to books. It is the value I have been using for the past 25 years when rebuilding a rear axle assembly.
Tom Endy