Guys, here are my thoughts on Model A coil polarity.
Each time a given cylinder's piston approaches TDC on the power stroke, that cylinder's spark plug fires a series of sparks across the gap between its center electrode and its ground side electrode. When viewed on an oscilloscope, this is actually a series of sparks / flows of electrons / currents rather than a single one. Each successive spark in the series becomes less intense than the previous until the series dies out due to various resistances. From start to finish, each of the individual current flows / sparks will have reversed polarity from the previous, as in AC / residential electric services. This phenomenon is a result of the repeated build up of very high voltage, i.e. hundreds of volts, in the condensor and is akin to the ringing / resonance of a church bell or say the liberty bell.
It has been found for efficiency and strength of these individual series of sparks, that the initial polarity at the spark plug center electrode should be negative. This means that the current / electron flow / spark is from the plug's center electrode to the ground electrode. This first, initial spark of the series is much stronger, i.e. higher voltage, than its successors as it has to ionize the fuel and air mixture that occupies the space between the center electrode and the ground one. Once ionized the fuel air mixture offers less resistance to the alternating polarity, less intense series of sparks that follow.
The polarity of the initial, ionizing spark for a given cylinder's power stroke is determined by the direction of the initial current flow through the primary coil windings. The initial flow of current / electrons comes from the battery or the generator / alternator. This initial current flow determines polarity of the magnetic field that builds to a saturation point each time the points close.
Depending on which end of the primary coil winding is connected to the current source, i.e. one of the terminal posts in the terminal box, the polarity of the initial magnetic field will be reversed, as in N/S or S/N. (I'm thinking this is Lenz's law, the right hand thumb rule) On the Model A the initial flow of electrons into the primary winding is always flowing in the same direction. Reverse the flow of electrons through the primary winding and the initial magnetic field reverses. The initial N/S or S/N polarity of the initial magnetic field ultimately determines whether or not the initial strong spark at the plug flows from the center electrode to the ground side or vice versa.
The stock Model A uses a + positive ground electrical system. Automotive lead-acid batteries have an anode and a cathode. The aNode is the Negative post and the cathode is the positive post. The positive ground system is, IMHO, easiest to understand and diagnose if modern electron flow theory, which was proven around 1900, is used. This means that electrons flow from the - negative post of the battery through the cable and wire connections to the terminal box and on to one or the other sides of the coil. But what determines which end of the primary winding will always give us the correct N/S or S/N initial magnetic field polarity? I believe as Kirby does in his post above that it is the way the two windings are connected at one end, but I'm not sure. It may be something deeper in Lenz's or Faraday's laws.
As I interpret it, the coil doesn't care which end of the primary winding you connect the current source to. It's the spark plugs that need it to be connected correctly.