The transmission shaft should not turn in the pilot bearing, so the fit needs to be 0.001 to 0.003" clearance in my opinion. I recently restored a worn journal on a transmission shaft with JB Weld. After curing, I abraded the JB Weld to a diameter that was a snug fit into the pilot bearing. I have 100 miles on this fix, and so far it is working (no clutch chatter).