The generator will not keep up with the current draw of the head lights when the engine rpm is low. Does the ammeter go to zero or charging when the engine is revved a little? Even at higher revs the generator will not keep up with the current draw of the head lights if the third brush is set up for daylight driving.
If you do a lot of driving at night you will want to install the focused beam LED head light bulbs. These are brighter and thus safer and draw much less current.
If your ammeter is jumping back and forth when the engine is at a fast idle then there may be something wrong in the generator or a loose wire somewhere. Are you sure you installed the new electronic cutout the correct way?