Keep us informed on developments. I've had the same problem for the past three years, starting from the day my new rebuild was installed. Mine sort of comes and goes, as the car just sits and idles in the driveway. Doesn't seem to be getting any worse over a few kilomiles, including drive to Williamsburg meet right after installation. The rebuilder was at that meet so I could have him take a listen--had no ideas. Others have suggested a startling variety of possibilities, none of which seem to fit the data.
If you've got a timing light and mark on your crank pulley, here's a cute trick that can help narrow possibilities, taken from
http://remanufactured.com/Engine_Noise_Diagnosis_101.htm :
Diagnose Noises with a timing light?
Valve train noises occur at half of crankshaft speed so even if your ear can't tell whether the noise is happening at 700 rpm (raps per minute) or only 350 rpm, your eyes can. Hook the timing light to any one cylinder and watch the flash illuminate the timing mark. Stare at it for a while and see if the flash jives with the knock. If it does, then it is more likely to be rocker arms, pushrods, lifters, camshaft, cam bearings, timing chain and gears. If the noise seems twice as fast it is probably in the crank, mains, rods, rod bearings, wristpins and pistons.
Even if you don't currently use a timing light to set your timing, I recommend buying a cheapie to play with; White-Out typo correction stuff makes a nice timing mark on crank pulley, but any white paint would work. My knock is apparently in the valve train system, so it's nice to know I don't have to fret about bearing shims and such.
Steve