Just a thought but I'm also thinking that the rear float-A-motor mounts may play in to the overall problem. If the rear of the engine is sitting too low, it will through off the angle of the crankshaft pulley and ratchet nut in relation to hand crank alignment . A couple of things to consider is, Are the rear float-A-motor biscuits too tight, hardened and squshed down too far? this would lower the rear of the engine. The rear mounts don't need to be too tight either or this can add vibration. Could the frame be slightly sagging at the rear mounts? Check the gap at the lower rear of the hood. If the gap is wide at the bottom and too close at the front, this will be a dead give away. If the torque tube is touching or nearly touching the service brake cross shaft, this is another indication of frame sag or problems related to the float-A motor mounts. Sometimes the rear parts of the float-A-motor mounts will be l;eft off and cause the rear of the engine and transmission to get out of proper alignment which will effect alignment at the front. The rear most part of the float-A-motor mount connects to the universal joint housing and a thick square rubber block with a metal piece attached with two bolts fit over the edge of the center crossmember and raises tand stabilizes the transmission and is a necessity for proper operation of the float-a-motor mount system. I use the front mount spring setup that Bob C pictures above without the rubber parts with a spring under the castile nut with good results. Just a few thoughts and areas to check.