It is just a very strange way to deal with quench issues. Also, imagine the next guy that takes the engine apart . . . would be one big "What the heck is this?" type of moment. It will make any future head work a real PITA - as you can no longer deck the head in any normal fashion.
But, it is your engine and you obviously have the skills and equipment to do such a job. And obviously it doesn't cost you anything to use this approach
I get that, I really do. But I gave up caring about the "weird" factor on my own stuff long ago. Iron heads are cheap, about $25 each, I can test with iron heads without much risk. Worst case, bolt stock heads on and it's a normal 36 engine. I already have the gasket pattern digitized, I could do this in a week of evenings if I needed to. I think the hardest part might be preparing the heads properly to clamp them down parallel to the table. The alternative is waiting for pistons, or waiting for a crank to be done, and nothing outsourced seems to be going quickly lately. Modifying the heads is going to be way more entertaining for me than waiting for parts would be. (When your only tool is a hammer, everything looks like nail, right?)
If I hurt a custom piston, then I'm waiting for more to be made, if I hurt a special crank, I'm in more trouble. If I hurt a head I made, I make another. If someone else is working on it they would have the same problems plus I won't be around to care.
Plus this way I can easily experiment with how close I can get the pistons to the head if I want to. I cut my engine teeth on '70s Modified eliminator SBCs that often had the pistons touching the heads at 10k+. (I don't anticipate that sort of thing to happen, but this is a what-if post, right?)
I'm sort of surprised this deck height issue on flat tops hasn't been discussed here before. Seems like everything else has been...
This is not a done deal yet of course, but it's how I'm leaning unless I run into something that stops me.
Thanks for the input!