Mr. Gilitos has got it right, for the Number one reason for Rods not to be in alignment. There is not a Rod lathe, Milling machine Ect. that will that will bore a Perfect aligned Rod! It should be up to the Rod rebuilder, to check Rod Alignment and after that, it would be up to the Engine Builder to recheck, before assembly, but many don't because they don't know they should.
There was a comment about New Rods a while back saying, the New Rods don't have to be checked, as they are Newly made, and they never checked them, and have put them in many engines with out doing that, lots of luck to the owners of the engines they did!
We check all Rods, and out of 30,000 Model A rods, we found ONE we didn't have to Tweak, and that is a big deal, as it is rare!
Even with the checked aligment on a Model A Rod, when you hone the New Bushing for a wrist pin, they should be checked for twist, and bend. The OFF SET should not change if it was done already.
When we talk alignment, we are talking .001 to say .010 thousandths, out but we have had reports from other shops, they have had rebuilt rods as much as 1/4 inch. You would think that a little far fetched, but after there rod lathe was seen, and there was a 3/8th's belley in the Ways, all became clear!
Many Rods that were straight, have been bent in vice Jaws, taking off the caps, and putting on the pistons, by some owners doing there own work.
Thanks Herm.