A few comments:
Multimeters have a fuse in the amperage reading circuit. Depending on the make it could be 10 amps. If you have a short and use the amperage reading it will blow the fuse. Also, depending on the multimeter, measuring voltage will not kill it unless it is a old manual one and you set it on millivolts instead of 10 volts.
I recommend installing a voltmeter in your car in addition to the ammeter. It will tell you the condition of the battery before you start the car and if the voltage falls too much when starting due to a bad battery or bad starter or other electrical problem. It will also tell you if you are undercharging or overcharging the battery. The charging voltage should be 7.2 volts.