'55 and later Ford cars had large rubber plugs on the flat part of the floor (one on each floor pan, for a total of four, two in front and two in back). Earlier models may have had floor plugs also. These were provided for water drainage, but you had to lift up the floorcovering to access them.
Would have been useful for convertible models left out in the rain with the top down, but i doubt anybody bothered popping the plugs to drain the water regardless of sedan, hardtop or convertible.
Notice that the repro floorpans you get do not have the drain holes stamped out, nor any body mounting bolt holes. When I put my new floorpans in, I did not bother to punch out drain-holes.